Bioconductor Alternative splicing

Showing : Alternative splicing • reset

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715

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.7 years ago noahhelton98 ▴ 20

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919

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sgseq alternative splicing rna seq

updated 4.5 years ago by Leonard Goldstein ▴ 220 • written 4.5 years ago by 116100016 • 0

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807

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rna seq SGSeq Alternative splicing

updated 4.7 years ago by Leonard Goldstein ▴ 220 • written 4.7 years ago by 116100016 • 0

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1.1k

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aspli readCounts rna-seq alternative splicing AS

5.3 years ago fernandalpcosta ▴ 10

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917

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R alternative splicing ASpli AsDiscover

5.5 years ago abdul rawoof ▴ 60

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991

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rnaseq alternative splicing ASpli

5.6 years ago nicolas.guyon2 • 0

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1.5k

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rna-seq alternative splicing SGSeq

5.6 years ago andrea.bast • 0

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1.2k

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maser R rMATs alternative splicing

5.8 years ago Reza • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.7 years ago by Gordon Smyth 51k • written 6.7 years ago by lirongrossmann ▴ 80

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1.2k

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limma voom alternative splicing

8.3 years ago osa.zuta ▴ 40

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2.7k

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sgseq splicing alternative splicing

updated 8.3 years ago by Leonard Goldstein ▴ 220 • written 8.3 years ago by vakul.mohanty ▴ 20

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1.1k

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deseq2 dexseq alternative splicing

updated 8.5 years ago by Michael Love 42k • written 8.6 years ago by sahiilseth • 0

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.7 years ago Fahmi Nazarie • 0

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1.9k

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dexseq alternative splicing exon skipping

updated 9.3 years ago by Simon Anders ★ 3.7k • written 9.3 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: error loading collectTRI regulon by silvaesilva.da • 0

Fantastic. Thank you very much. Everything has been sorted out

Answer: DESeq2 returns results for group with just one replicate by James W. MacDonald 66k

There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …

Answer: Limma model.matrix design with batch effect and different life stages proportion by Masongeorge • 0

Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.

Comment: error loading collectTRI regulon by deeenes ▴ 50

I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…

Answer: GESA with certain gene list returns no result with human genom, but many result by James W. MacDonald 66k

Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…

Votes

Answer: DESeq2 returns results for group with just one replicate

Comment: error loading collectTRI regulon

A: Scaling option in fastMNN

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Awards • All

Scholar to James W. MacDonald 66k